Download e-book for kindle: Computer-Assisted Bacterial Systematics by M. Goodfellow

By M. Goodfellow

ISBN-10: 0080984444

ISBN-13: 9780080984445

ISBN-10: 0122896653

ISBN-13: 9780122896651

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Extra resources for Computer-Assisted Bacterial Systematics

Sample text

1975) Dixon and Brown (1979) Wishart (1978) Alvey et al. (1977) Kaufman and Massart (1981) M. J. Sackin (unpublished) Removal of Variability Performance 39 Due to Instrument and Reagent T h e m e t h o d s u s e d to d i m i n i s h the effects of i n s t r u m e n t a n d r e a g e n t variability d e p e n d to s o m e extent o n the t y p e of i n s t r u m e n t a n d m e a s u r e m e n t u s e d . M e a s u r ing e n z y m a t i c activities, B a s c o m b a n d S p e n c e r ( 1 9 8 0 ) i n c l u d e d , e a c h d a y , a n u m b e r of s a m p l e s c o n t a i n i n g different c o n c e n t r a t i o n s of e v e r y type of reaction product a s s a y e d in their c o n t i n u o u s - f l o w s y s t e m .

T r e e s with an existing similarity scale are t e r m e d valued trees. If o n e is not p e r s u a d e d of a rank o r d e r i n g of the j o i n s of either or both trees, then o n e m a y let the ' d i s t a n c e ' at a j o i n b e equal to the total n u m b e r of ' d e s c e n d a n t ' O T U s e m a n a t i n g from that j o i n (bare trees). T h i s might arise w h e n o n e w i s h e s to treat trees as identical w h e n e v e r they are L O E . In both these s c h e m e s all the tree metrics b e c o m e available again as well as the c o p h e n e t i c correlation and the J a r d i n e and S i b s o n stress m e a s u r e s .

T h e t w o s u p e r i m posed d e n d r o g r a m s of F i g . 3 m a y b e c o n s i d e r e d to differ only in the s h a d e d a r e a , and the dissimilarity b e t w e e n the d e n d r o g r a m s m a y b e c o n s i d e r e d to d e p e n d on (i) the d e g r e e to w h i c h the g r o u p i n g s are different o v e r the similarity r a n g e w h i c h the shaded area c o v e r s , a n d (ii) the height a of the s h a d e d area. T h e p r o d u c t of these t w o quantities m e a s u r e s the overall dissimilarity b e t w e e n the t w o d e n d r o g r a m s , in t e r m s of a tree metric.

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Computer-Assisted Bacterial Systematics by M. Goodfellow


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